Publications | petrusgladioli

82. Gladieux P, van Oosterhout C, Fairhead S, Jouet A, Ortiz D, Ravel S, Shrestha R-K, Frouin J, He X, Zhu Y, Morel JB, Huang H, Kroj T, Jones JDG. Extensive immune receptor repertoire diversity in disease-resistant rice landraces. bioRxiv 2022.12.05.519081; doi: https://doi.org/10.1101/2022.12.05.51908

81. Lahfa M, Barthe P, De Guillen K, Cesari S, Raji M, Kroj T, Le Naour--Vernet M, Hoh F, Gladieux P, Roumestand C, Gracy J, Declerck N, Padilla A. 2024. The structural landscape and diversity of Pyricularia oryzae MAX effectors revisited. Plos Pathogens. In press

80. Ramírez Martínez J, Guillou S, Le Prieur S, Di Vittorio P, Bonal F, Taliadoros D, Guéret E, Fournier E, Stukenbrock EH, Valade R, Gladieux P. 2024. Deep population structure linked to host vernalization requirement in the barley net blotch fungal pathogen. Microbial genomics. In press

79. Baudin M, Le Naour-Vernet M, Gladieux P, Tharreau D, Lebrun MH, Lambou K, Leys M, Fournier E, Césari S, Kroj T. Pyricularia oryzae: Lab star and field scourge. Molecular Plant Pathology, 20(4), e13449. https://doi.org/10.1111/mpp.13449

78. Taliadoros D, Feurtey A, Wyatt N, Gladieux P, Friesen T, Stukenbrock EH. 2023. Emergence and spread of the barley net blotch pathogen coincided with crop domestication and cultivation history. PLOS Genetics. https://doi.org/10.1101/2023.07.28.550921

77. Hensen N, Bonometti L, Westerberg I, Onut Brännström I, Guillou S, Cros-Aarteil S, Calhoun S, Haridas S, Kuo A, Mondo S, Pangilinan J, Riley R, LaButti K, Andreopoulos B, Lipzen A, Chen C, Yan M, Daum C, Ng V, Clum A, Steindorff A, Ohm RA, Martin F, Silar P, Natvig DO, Lalanne C, Gautier V, Ament-Velásquez SL, Kruys Å, Hutchinson MI, Powell AJ, Barry K, Miller AN, Grigoriev IV, Debuchy R, Gladieux P, Hiltunen Thorén M, Johannesson H. 2023. Genome-scale phylogeny and comparative genomics of the fungal order Sordariales. Molecular Phylogenetics and Evolution. https://doi.org/10.1016/j.ympev.2023.107938

76. Bonometti L, De Bellis F, Cros-Arteil S, Gueret E, Gladieux P. 2023. Draft genome sequences of Neurospora crassa clade B, isolated from burned Cytisus sp. plants in France. Microbiology Resource Announcements, e00627-23. https://doi.org/10.1128/MRA.00627-23

75. Le Naour—Vernet M, Charriat F, Gracy J, Cros-Arteil S, Ravel S, Veillet F, Meusnier I, Padilla A, Kroj T, Cesari S, Gladieux P. (2023). Adaptive evolution in virulence effectors of the rice blast fungus Pyricularia oryzae. PLoS Pathogens, 19(9), e1011294. https://doi.org/10.1371/journal.ppat.1011294

74. Ali S, Gladieux P, Ravel S, Adreit H, Meusnier I, Milazzo J, Cros-Arteil S, Bonnot F, Jin B, Dumartinet T, Charriat F, Lassagne A, He X, Tharreau D, Huang H, Morel JB, Fournier E. Coevolution with Spatially Structured Rice Landraces Maintains Multiple Generalist Lineages in the Rice Blast Pathogen. Molecular Ecology. doi: 10.1111/mec.16927

73. Vittorelli N, Snirc A, Levert E, Gautier V, Lalanne C, De Filippo E, Rodríguez de la Vega RC, Gladieux P, Guillou S, Zhang Y, Tejomurthula S, Grigoriev IV, Debuchy R, Silar P, Giraud T, Hartmann FE (2023) Stepwise recombination suppression around the mating-type locus in the fungus Schizothecium tetrasporum (Ascomycota, Sordariales). PLOS Genetics. doi: 10.1371/journal.pgen.1010347

72. Simon A, Mercier A, Gladieux P, Poinssot B, Walker AS, Viaud M (2023) Botrytis cinerea strains infecting grapevine and tomato display contrasted repertoires of accessory chromosomes, transposons and small RNAs. Peer Community Journal. doi: 10.24072/pcjournal.211

71. Rogério F, Van Oosterhout C, Ciampi-Guillardi M, Correr FH, Hosaka GK, Cros-Arteil S, Rodrigues Alves Margarido G, Massola Junior NS, Gladieux P (2022) Means, motive and opportunity for biological invasions: Genetic introgression in a fungal pathogen. Molecular Ecology. https://doi.org/10.1111/mec.16366

70. Caffier V, Shiller J, Bellanger MN, Collemare J, Expert P, Gladieux P, Pascouau C, Sannier M, Le Cam B (2022). Hybridizations between formae speciales of Venturia inaequalis pave the way for a new biocontrol strategy to manage fungal plant pathogens. Phytopathology. 112(7):1401-1405. https://doi.org/10.1094/phyto-05-21-0222-sc

69. Thierry M, Charriat F, Milazzo J, Adreit H, Ravel S, Cros-Arteil S, Borron S, Sella V, Kroj T, Ioos R, Fournier E, Tharreau D, Gladieux P (2022) Maintenance of divergent lineages of the Rice Blast Fungus Pyricularia oryzae through niche separation, loss of sex and post-mating genetic incompatibilities. PLOS Pathogens. 18(7): e1010687. https://doi.org/10.1371/journal.ppat.1010687

68. Lahfa M, Padilla A, de Guillen K, Pissarra J, Raji M, Cesari S, Kroj T, Gladieux P, Roumestand C, Barthe P (2022) 1H, 13C, 15 N backbone and side-chain NMR assignments for three MAX effectors from Magnaporthe oryzae. Biomol NMR Assign. 16(2): 305-309. https://doi.org/10.1007/s12104-022-10095-2

67. Mercier A, Simon A, Lapalu N, Giraud T, Bardin M, Walker AS, Viaud M, Gladieux P (2021) Population genomics reveals molecular determinants of specialization to tomato in the polyphagous fungal pathogen Botrytis cinerea in France. Phytopathology. https://doi.org/10.1094/PHYTO-07-20-0302-FI

66. Stam R, Gladieux P, Vinatzer BA, Goss EM, Potnis N, Candresse T, Brewer MT (2021) Population Genomic- and Phylogenomic-Enabled Advances to Increase Insight Into Pathogen Biology and Epidemiology. Phytopathology. 111(1): 8-11. https://doi.org/10.1094/PHYTO-11-20-0528-FI

65. Ament-Velásquez SL, Johannesson H, Giraud T, Debuchy R, Saupe SJ, Debets AJM, Bastiaans E, Malagnac F, Grognet P, Peraza-Reyes L, Gladieux P, Kruys Å, Silar P, Huhndorf SM, Miller AN, Vogan AA (2020) The taxonomy of the model filamentous fungus Podospora anserina. MycoKeys 75: 51-69. https://doi.org/10.3897/mycokeys.75.55968

64. Pordel A, Ravel S, Charriat F, Gladieux P, Cros-Arteil S, Milazzo J, Adreit H, Javan-Nikkah M, Mirzadi-Gohari A, Moumeni A, Tharreau D (2020) Tracing the Origin and Evolutionary History of Pyricularia oryzae Infecting Maize and Barnyard Grass. Phytopathology. 111(1): 128-136. https://doi.org/10.1094/PHYTO-09-20-0423-R

63. Alonso P, Blondin L, Gladieux P, Mahé F, Sanguin H, Ferdinand R, Filloux D, Desmarais E, Cerqueira F, Jin B, Huang H, He X, Morel JB, Martin D, Roumagnac P, Vernière C (2020) Heterogeneity of the rice microbial community of the Chinese centuries-old Honghe Hani rice terraces system. Environmental Microbiology. 22(8), 3429–3445. doi:10.1111/1462-2920.15114

62. Hartmann FE, Rodríguez de la Vega RC, Gladieux P, Ma WJ, Hood ME, Giraud T (2020) Higher gene flow in sex-related chromosomes than in autosomes during fungal divergence. Molecular biology and Evolution. 37(3): 668-682.https://doi.org/10.1093/molbev/msz252

61. Gladieux P, De Bellis F, Hann-Soden C, Svedberg J, Johannesson H, & Taylor JW (2020) Neurospora from natural populations: population genomics insights into the life history of a model microbial eukaryote. In: Dutheil, J.Y. (eds) Statistical Population Genomics, 313-336. Methods in Molecular Biology, vol 2090. Humana, New York, NY. https://doi.org/10.1007/978-1-0716-0199-0_13

60. Daskalov A, Gladieux P, Heller J, Glass NL (2019) Programmed Cell Death in Neurospora crassa Is Controlled by the Allorecognition Determinant rcd-1. Genetics. 213(4):1387-1400. https://doi.org/10.1534/genetics.119.302617

59. Mercier A, Carpentier F, Duplaix C, Auger A, Pradier JM, Viaud M*, Gladieux P*, Walker AS* (2019) The polyphagous plant pathogenic fungus Botrytis cinerea encompasses host-specialized and generalist populations. Environmental Microbiology. 21: 4808-4821 doi:10.1111/1462-2920.14829

58. Hartmann FE, Rodríguez de la Vega RC, Carpentier F, Gladieux P, Cornille A, Hood ME, Giraud T (2019) Understanding Adaptation, Coevolution, Host Specialization, and Mating System in Castrating Anther-Smut Fungi by Combining Population and Comparative Genomics. Annual Review of Phytopatholology. 57: 431-457. https://doi.org/10.1146/annurev-phyto-082718-095947

57. Alonso P, Gladieux P, Moubset O, Shih PJ, Mournet P, Frouin J, Blondin L, Ferdinand R, Fernandez E, Julian C, Filloux D, Adreit H, Fournier E, Ducasse A, Grosbois V, Morel J-B, Huang H, Jin B, He X, Martin DP, Vernière C, Roumagnac P (2019) Emergence of Southern Rice Black-Streaked Dwarf Virus in the Centuries-Old Chinese Yuanyang Agrosystem of Rice Landraces. Viruses. 11, 985. https://doi.org/10.3390/v11110985

56. Rogério F, Gladieux P, Massola Jr NS, Ciampi-Guillardi M (2019) Multiple Introductions Without Admixture of Colletotrichum truncatum Associated with Soybean Anthracnose in Brazil. Phytopathology. 109: 681-689. https://doi.org/10.1094/phyto-08-18-0321-r

55. Thierry M, Gladieux P, Fournier E, Tharreau D, Ioos R (2019) A genomic approach to develop a new qPCR test enabling detection of the Pyricularia oryzae lineage causing wheat blast. Plant Disease. 104: 60-70. doi: 10.1094/PDIS-04-19-0685-RE

54. Civáň P, Ali S, Batista-Navarro R, Drosou K, Ihejieto C, Chakraborty D, Ray A, Gladieux P, Brown TA (2019) Origin of the aromatic group of cultivated rice (Oryza sativa L.) traced to the Indian subcontinent. Genome Biology and Evolution. 11: 832-843. https://doi.org/10.1093/gbe/evz039

53. Valent B, Farman M, Tosa Y, Begerow D, Fournier E, Gladieux P, Islam MT, Kamoun S, Kemler M, Kohn LM, Lebrun M-H, Stajich J, Talbot NJ, Terauchi R, Tharreau D, Zhang N (2019) Pyricularia graminis-tritici is not the correct species name for the wheat blast fungus: Response to Ceresini et al. Molecular Plant Pathology. 20:173-179. https://doi.org/10.1111/mpp.12778

52. Abbate JL*, Gladieux P*, Hood ME, de Vienne DM, Antonovics J, Snirc A, and Giraud T* (2018) Co-occurrence among three Divergent plant-castrating fungi in the same Silene Host Species. Molecular Ecology. 27(16). doi: 10.1111/mec.14805

51. Gladieux P (2018) What makes a specialized endophyte special? Molecular Ecology. 25(18). https://doi.org/10.1111/mec.14775

50. Gladieux P (2018) Updates in the language of Histoplasma biodiversity. mBio. 9:e00181. https://doi.org/10.1128/mBio.00181-18

49. Zhang N, Cai G, Price D, Crouch JA, Gladieux P, Hillman B, Khang CH, Lebrun MH, Lee YH, Luo J, Qiu H, Veltri D, Wisecaver JH, Zhu J, Bhattacharya D (2018) Genome wide analysis of the transition to pathogenic lifestyles in Magnaporthales fungi. Scientific Reports. 8: 5862. https://doi.org/10.1038/s41598-018-24301-6

48. Heller J, Clavé C, Gladieux P, Saupe SJ, Glass, NL (2018) NLR surveillance of essential SEC-9 SNARE proteins induces programmed cell death upon allorecognition in filamentous fungi. PNAS. 115(10):E2292-E2301. https://doi.org/10.1073/pnas.1719705115

47. Gladieux P, Ravel S, Rieux A, Cros-Arteil S, Adreit H, Milazzo J, Thierry M, Fournier E, Terauchi R, Tharreau D. 2018. Coexistence of multiple endemic and pandemic lineages of the rice blast pathogen. mBio. 9:e01806-17. https://doi.org/10.1128/mbio.01806-17

46. Gladieux P*, Condon B*, Ravel S, Soanes D, Maciel JLN, Nhani A, Terauchi R, Lebrun MH, Tharreau D, Mitchell T, Pedley KF, Valent B, Talbot N, Farman M, Fournier E (2018) Gene flow between divergent cereal-and grass-specific lineages of the rice blast fungus Magnaporthe oryzae. mBio. 8:e01339-17. https://doi.org/10.1128/mbio.01219-17

45. Taylor JW, Branco S, Gao C, Hann-Soden C, Montoya L, Sylvain I, Gladieux P (2017) Sources of Fungal Genetic Variation and Associating It with Phenotypic Diversity. Microbiology Spectrum. 5(5). https://doi.org/10.1128/microbiolspec.funk-0057-2016

44. Petit E, Silver C, Cornille A, Gladieux P, Rosenthal L, Bruns E, Yee S, Antonovics J, Giraud T, Hood ME (2017) Co-occurrence and hybridization of anther-smut pathogens specialized on Dianthus hosts. Molecular Ecology. 26(7):1877-1890. https://doi.org/10.1111/mec.14073

43. Coi A-L, Bigey F, Mallet S, Marsit S, Zara G, Gladieux P, Galeote V, Budroni M, Dequin S, Legras J-L (2017) Genomic signatures of adaptation to wine biological ageing conditions in biofilm-forming flor yeast. Molecular Ecology. 26(7):2150-2166. https://doi.org/10.1111/mec.14053

42. Badouin H, Gladieux P, Gouzy J, Siguenza S, Aguileta G, Snirc A, Le Prieur S, Jeziorski C, Branca A, Giraud T (2017) Widespread selective sweeps throughout the genome of model plant pathogenic fungi and identification of effector candidates. Molecular Ecology. 26(7):2041-2062. https://doi.org/10.1111/mec.13976

41. Branco S, Bi K, Liao H-L, Gladieux P, Badouin H, Ellison CE, Nguyen NH, Vilgalys R, Peay KG, Taylor JW, Bruns TD. 2017. Continental-level population differentiation and environmental adaptation in the mushroom Suillus brevipes. Molecular Ecology. 26(7):2063-2076. https://doi.org/10.1111/mec.13892

40. Liao J, Huang H, Meusnier I, Adreit H, Ducasse A, Bonnot F, Pan L, He X, Kroj T, Fournier E, Tharreau D, Gladieux P, Morel JB (2016) Pathogen effectors and plant immunity determine specialization of the blast fungus to rice subspecies. eLife. 5:e19377. https://doi.org/10.7554/eLife.19377

39. Islam T, Croll D, Gladieux P, Soanes D, Persoons A, Bhattacharjee P, Hossain S, Gupta D, Rahman MM, Mahboob MG, Cook N, Salam M, Bueno Sancho V, Maciel JN, Nani A, Castroagudin V, de Assis Reges JT, Ceresini P, Ravel S, Kellner R, Fournier E, Tharreau D, Lebrun MH, McDonald B, Stitt T, Swan D, Talbot N, Saunders D, Win J, Kamoun S (2016) Emergence of wheat blast in Bangladesh was caused by a South American lineage of Magnaporthe oryzae. BMC Biology. 14:84. https://doi.org/10.1186/s12915-016-0309-7

38. Feurtey A, Gladieux P, Hood ME, Snirc A, Cornille A, Rosenthal L, Giraud T (2016). Strong phylogeographic costructure between the anther-smut fungus and its white campion host. New Phytologist. 212:668-679. https://doi.org/10.1111/nph.14125

37. Ali S*, Soubeyrand S*, Gladieux P, Giraud T, Leconte M, Gautier A, Mboup M, Chen W, de Vallavieille-Pope C, Enjalbert J* (2016) CloNcaSe: Estimation of sex frequency and effective population size by clonemate re-sampling in partially clonal organisms. Molecular Ecology Resources. 16(4):845-61. https://doi.org/10.1111/1755-0998.12511

36. Heller J, Zhao J, Rosenfield G, Kowbel D, Gladieux P, Glass L (2016) Characterization of greenbeard genes involved in long distance kind discrimination in a microbial eukaryote. PLOS Biology. 14(4): e1002431. https://doi.org/10.1371/journal.pbio.1002431

35. Bueker B*, Eberlein C*, Gladieux P*, Schaefer A, Snirc A, Bennett DJ, Begerow D, Hood ME, Giraud T (2016) Distribution and population structure of the anther smut fungus Microbotryum silenes-acaulis parasitizing an arctic-alpine plant. Molecular Ecology. 25:811-824. https://doi.org/10.1111/mec.13512

34. Lemaire C, de Gracia M, Thibault L, Michalecka M, Lindhard-Pedersen H, Guérin F, Gladieux P, Le Cam B (2016) Emergence of new virulent populations of apple scab from non-agricultural disease reservoirs. New Phytologist. 209(3):1220-9. https://doi.org/10.1111/nph.13658

33. Gladieux P, Wilson BA, Perraudeau F, Montoya LA, Kowbel D, Hann-Soden C, Fischer M, Sylvain I, Jacobson DJ, Taylor JW (2015) Genomic Sequencing Reveals Historical, Demographic, and Selective Factors Associated with the Diversification of the Fire-Associated Fungus Neurospora discreta. Molecular Ecology. 24(22):5657-5675. https://doi.org/10.1111/mec.13417

32. Short DPG*, Gurung S*, Gladieux P, Inderbitzin P, Atallah ZK, Nigro F, Li G, Benlioglu S, Subbarao KV (2015) Globally invading populations of the fungal plant pathogen Verticillium dahliae are dominated by multiple divergent lineages. Environmental Microbiology. 17: 2824-2840. https://doi.org/10.1111/1462-2920.12789

31. Zhao J, Gladieux P, Hutchison E, Bueche J, Hall C, Perraudeau F, Glass NL (2015) Identification of allorecognition loci in Neurospora crassa by genomics and evolutionary approaches. Molecular Biology and Evolution. 32: 2417-2432. https://doi.org/10.1093/molbev/msv125

30. Branco S, Gladieux P, Ellison CC, Kuo A, LaButti K, Lipzen A, Grigoriev IV, Liao H-L, Vilgalys R, Peay KG, Taylor JW, Bruns TD (2015) Genetic isolation between two recently diverged populations of a symbiotic fungus. Molecular Ecology. 24: 2747-2758. https://doi.org/10.1111/mec.13132

29. Gladieux P, Feurtey A, Hood ME, Snirc A, Clavel J, Dutech C, Roy M, Giraud T (2015) The population biology of fungal invasions. Molecular Ecology. 24: 1969–1986. https://doi.org/10.1111/mec.13028

28. Fontanillas E, Hood ME, Badouin H, Petit E, Barbe V, Gouzy J, de Vienne DM, Aguileta G, Poulain J, Wincker P, Chen Z, Toh SS, Cuomo C, Perlin MH, Gladieux P, Giraud T (2015) Degeneration of the non-recombining regions in the mating type chromosomes of the anther smut fungi. Molecular Biology and Evolution. 32(4):928–943. https://doi.org/10.1093/molbev/msu396

27. Walker AS, Gladieux P, Decognet V, Fermaud M, Confais J, Roudet J, Bardin M, Bout A, Nicot PC, Poncet C, Fournier E (2015) Population structure and temporal maintenance of the multihost fungal pathogen Botrytis cinerea: causes and implications for disease management. Environmental Microbiology. 17(4): 1261-1274. https://doi.org/10.1111/1462-2920.12563

26. Cornille A, Feurtey A, Gélin U, Ropars J, Misvanderbrugge K, Gladieux P, Giraud T (2015) Anthropogenic and natural drivers of crop-to-wild gene flow in a temperate wild fruit tree. Evolutionary Applications. 8(4): 373-384. https://doi.org/10.1111/eva.12250

25. Ali S, Leconte M, Rahman H, Saqib MS, Gladieux P, Enjalbert J, de Vallavieille-Pope C (2014) A high virulence and pathotype diversity of Puccinia striiformis f. sp. tritici at its centre of diversity, the Himalayan region of Pakistan. European Journal of Plant Pathology. 140(2):275-290. https://doi.org/10.1007/s10658-014-0461-2

24. Ali S, Gladieux P, Enjalbert J, Leconte M, Gautier A, Justesen AF, Hovmøller MS, de Vallavieille-Pope C (2014) Origin, migrations routes and genetic structure of worldwide populations of the wheat yellow rust pathogen Puccinia striiformis f.sp. tritici. PLOS Pathogens. 10(1): e1003903. https://doi.org/10.1371/journal.ppat.1003903

23. Ali S, Gladieux P, Rahman H, Saqib MS, Fiaz M, Ahmed H, Leconte M, Gautier A, Justesen AF, Hovmøller MS, Enjalbert J, de Vallavieille-Pope C (2014) Inferring the contribution of sexual reproduction, migration and off-season survival to the temporal maintenance of microbial populations: a case study on the wheat fungal pathogen Puccinia striiformis f.sp. tritici. Molecular Ecology. 23(3):603-17. https://doi.org/10.1111/mec.12629

22. Gladieux P, Ropars J, Badouin H, Branca A, Aguileta G, de Vienne DM, Rodriguez de la Vega RC, Branco S, Giraud T (2014) Fungal evolutionary genomics provides insight into the mechanisms of adaptive divergence in eukaryotes. Molecular Ecology. 23(4):753:773. https://doi.org/10.1111/mec.12631

21. Cornille A, Giraud T, Smulders MJM, Roldan-Ruiz I, Gladieux P (2014) Th

e domestication and evolutionary ecology of apples. Trends in Genetics. 30(2):57-65. https://doi.org/10.1016/j.tig.2013.10.002

20. Fournier E, Gladieux P, Giraud T (2013) The «Dr Jekyll and Mr Hyde fungus»: noble rot versus gray mold symptoms of Botrytis cinerea on grapes. Evolutionary Applications. 6(6): 960-969. https://doi.org/10.1111/eva.12079

19. Gladieux P, Devier B, Aguileta G, Cruaud C, Giraud T (2013) Purifying selection after episodes of recurrent adaptive diversification in fungal pathogens. Infection Genetics and Evolution. 17:123-131. https://doi.org/10.1016/j.meegid.2013.03.012

18. Cornille A, Gladieux P*, Giraud T* (2013) Crop-to-wild gene flow and spatial genetic structure in the closest wild relatives of the cultivated apple. Evolutionary Applications. 6(5): 737-748. https://doi.org/10.1111/eva.12059

17. Fontaine MC, Gladieux P, Hood ME, Giraud T (2013) History of the invasion of the anther smut pathogen on Silene latifolia in North America. New Phytologist. 198(3): 946-956. https://doi.org/10.1111/nph.12177

16. Cornille A, Giraud T, Bellard C, Tellier A, Le Cam B, Smulders MJM, Kleinschmit J, Roldan-Ruiz I, Gladieux P (2013) Post-glacial recolonization history of the European crabapple (Malus sylvestris Mill.), a wild contributor to the domesticated apple. Molecular Ecology. 22(8): 2249-2263. https://doi.org/10.1111/mec.12231

15. Cornille A, Gladieux P, Smulders MJM, Roldán-Ruiz I, Laurens F, Le Cam B, Nersesyan A, Clavel J, Olonova M, Feugey L, Gabrielyan I, Zhang XG, Tenaillon MI, Giraud T (2012) New Insight into the History of Domesticated Apple: Secondary Contribution of The European Wild Apple to the Genome of Cultivated Varieties. PLoS Genetics. 8(5): e1002703. https://doi.org/10.1371/journal.pgen.1002703

14. Dilmaghani A*, Gladieux P*, Gout L, Giraud T, Brunner PC, Grandaubert J, Stachowiak A, Balesdent MH, Rouxel T (2012) Migration patterns and changes in population biology associated with the worldwide spread of the oilseed rape pathogen Leptosphaeria maculans. Molecular Ecology. 21(10): 2519-33. https://doi.org/10.1111/j.1365-294x.2012.05535.x

13. Lê Van A, Gladieux P, Lemaire C, Cornille A, Giraud T, Durel CE, Caffier V, Le Cam B (2012) Evolution of pathogenicity traits in the apple scab fungal pathogen in response to the domestication of its host. Evolutionary Applications. 5: 694–704. https://doi.org/10.1111/j.1752-4571.2012.00246.x

12. Gladieux P*, Guérin F*, Giraud T, Caffier V, Lemaire C, Parisi L, Didelot F, Le Cam B (2011) Emergence of novel fungal pathogens by ecological speciation: importance of the reduced viability of immigrants. Molecular Ecology. 20: 4521-4532. https://doi.org/10.1111/j.1365-294x.2011.05288.x

11. Xhaard C, Fabre B, Andrieux A, Gladieux P, Barrès B, Frey P, Halkett F (2011) The genetic structure of the plant pathogenic fungus Melampsora larici-populina on its wild host is extensively impacted by host domestication. Molecular Ecology. 20: 2739-2755. https://doi.org/10.1111/j.1365-294x.2011.05138.x

10. Gladieux P, Giraud T, Kiss L, Genton BJ, Jonot O, Shykoff J (2011) Distinct invasion sources of common ragweed (Ambrosia artemisiifolia) in Eastern and Western Europe. Biological Invasions. 13(4): 933-944. https://doi.org/10.1007/s10530-010-9880-y

9. Gladieux P*, Vercken E*, Fontaine MC, Hood ME, Jonot O, Couloux A, Giraud T (2011) Maintenance of fungal pathogen species that are specialized to different hosts: allopatric divergence and introgression through secondary contact. Molecular Biology and Evolution. 28(1):459–471. https://doi.org/10.1093/molbev/msq235

8. Karapetyan AR, Gladieux P, Zakharov IA (2010) Genetic Polymorphism of Microbotryum violaceum s. l. Isolates Collected from Different Plant Species on the Territory of Russia. Russian Journal of Genetics. 46(11): 1395–1398. https://doi.org/10.1134/S1022795410110165

7. Vercken E*, Fontaine MC*, Gladieux P, Hood ME, Jonot O, Giraud T (2010) Glacial refugia in pathogens: European genetic structure of anther smut pathogens on Silene latifolia and Silene dioica. PLoS Pathogens. 6(12): e1001229. https://doi.org/10.1371/journal.ppat.1001229

6. Hood ME, Mena-Alí JI, Gibson AK, Oxelman B, Giraud T, Yockteng R, Arroyo MTK, Conti F, Pedersen A, Gladieux P, Antonovics J (2010). Distribution of the anther-smut pathogen Microbotryum on species of the Caryophyllaceae. New Phytologist. 187: 217-229. https://doi.org/10.1111/j.1469-8137.2010.03268.x

5. Giraud T, Gladieux P, Gavrilets S (2010). Linking the emergence of fungal plant disease with ecological speciation. Trends in Ecology & Evolution. 25: 387-395. https://doi.org/10.1016/j.tree.2010.03.006

4. Gladieux P, Caffier V, Devaux M, Le Cam B (2010). Host-specific differentiation among populations of Venturia inaequalis causing scab on apple, pyracantha and loquat. Fungal Genetics & Biology. 47: 511-521. https://doi.org/10.1016/j.fgb.2009.12.007

3. Gladieux P, Zhang X-G, Róldan-Ruiz I, Caffier V, Leroy T, Devaux M, Van Glabeke S, Coart E, Le Cam B (2010) Evolution of the population structure of Venturia inaequalis, the apple scab fungus, associated with the domestication of its host. Molecular Ecology. 19(4): 658-674. https://doi.org/10.1111/j.1365-294x.2009.04498.x

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* equal contribution